Shortcut Methods

Numerical Typicals for Genetics and Evolution - Molecular Basis of Inheritance: Shortcut and Trick


##DNA Structure and Replication

  • DNA length in human cell ≈ length of ~100 billion baseball fields.

  • # base pairs in the human genome ≈ # base pairs in ~1 million copies of the complete works of Shakespeare.

  • Coding sequence in the human genome ≈ number of words in ~200 copies of the Bible.

  • Human genome replication time ≈ driving from New York City to Los Angeles at an average speed of 50 mph (assuming perfect weather and no traffic delays).


##Transcription

  • # of RNA polymerases transcribing a gene ≈ # people needed to fill a few subway trains (in rush hour).

  • Average mRNA length ≈ length of a small book’s chapter (in terms of nucleotides).

  • Speed of RNA polymerase ≈ typing 300-500 words per minute without mistakes (assuming 4-5 nucleotides per word).

  • # of ribosomes translating mRNA ≈ # shoppers at a medium-sized store at peak hours.


##Translation

  • # of codons in genetic code ≈ # of possible 3-letter words that can be formed from the letters “A”, “C”, “G”, “T”.

  • # of amino acids in genetic code ≈ # amino acids in the standard set of Scrabble tiles (plus one blank).

  • # tRNA molecules in a cell ≈ # residents in a small town.

  • Speed of ribosomes during translation ≈ typing ~20-40 words per minute without mistakes.


##Gene Expression

  • Inducible gene’s fold change upon induction ≈ fold change in population of a country during a gold rush or immigration boom.

  • Repressible gene’s fold change upon repression ≈ fold change in population of a country during a famine or mass exodus.

  • # of transcription factors required for cooperative binding ≈ like 2 or 3 friends needed for a group decision (or an intervention).

  • Half-life of mRNA ≈ time it takes to read a newspaper’s front page.

  • Half-life of proteins ≈ time it takes to wash the dishes.


##Evolution

  • Nucleotide substitution rates ≈ the rate at which letters would randomly change in a book.

  • Synonymous vs non-synonymous substitution rates ≈ rate of changes that don’t change word meanings (e.g., “dog” to “dawg”) vs. those that do (e.g., “dog” to “frog”).

  • Mutation rates ≈ like finding a typo in a book of 1 billion pages (if typos were random occurrences).

  • Effective population size ≈ number of humans if the world’s people suddenly decided to form one village (no matter how spread out).

  • Branch lengths in phylogenetic trees ≈ lengths of branches on a family tree that connects 2 relatives.

  • Natural selection coefficients ≈ the effect of an advantage or disadvantage (like a superpower) passed down the genes.

  • Critical effective population size (Ne) for the Drift-barrier hypothesis ≈ like a threshold number of people below which genetic diversity in a town suffers.